Department of Genome Sciences
Foege Building S-250, Box 355065
3720 15th Ave NE, Seattle WA 98195-5065
phone: (206) 221-7377 | fax: (206) 685-7301
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An integrated map of structural variation in 2,504 human genomes
former grad student Peter Sudmant is lead author on paper in Nature, along with other Eichler lab members including programmer John Huddleston who is a shared first author.

Human genomics: The end of the start for population sequencing


A Genome-Wide Association Analysis Reveals Epistatic Cancellation of Additive Genetic Variance for Root Length in Arabidopsis thaliana
Former grad student Jennifer Lachowiec is lead author on paper in PLOS Genetics.

Nuclear and organellar genomes of Chrysochromulia algae
Two first-author ms. in PLoS Genetics and BMC Genomics report former GS grad student Blake Hovde's sequencing of the genomes of Chrysochomulina tobin, a newly defined algal species of high evolutionary and biotech interest.

How Wasps Use Viruses to Genetically Engineer Caterpillars
Research by Jim Thomas and Sean Schneider is featured in The Atlantic.

Positive selection in CD8+ T-cell epitopes of influenza nucleoprotein revealed by a comparative analysis of human and swine viral lineages
Heather Machkovech is lead author on paper in Journal of Virology.

Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data
Sonia Ting and Jarrett Egertson are lead authors on paper in Molecular & Cellular Proteomics.

Using data independent acquisition to model high-responding peptides for targeted proteomics experiments.
Brian Searle and Jarrett Egertson are lead authors on paper in Molecular & Cellular Proteomics.

Global diversity, population stratification, and selection of human copy number variation
Former graduate student Peter Sudmant is lead author on paper in Science.

High-throughput determination of RNA structure by proximity ligation
Vijay Ramani is lead author on paper in Nature Biotechnology.

Quantitative interactome analysis reveals a chemoresistant edgotype
Juan Chavez is lead author on paper in Nature Communications.

Site-specific amino-acid preferences are mostly conserved in two closely related protein homologs
Mike Doud is lead author on paper in Molecular Biology & Evolution.




Proteomics of Colwellia psychrerythraea at subzero temperatures – a life with limited movement, flexible membranes and vital DNA repair

Brook Nunn, Krystal Slattery, and Emma Timmins-Schiffman are authors on paper in Environmental Microbiology.

Comprehensive identification and analysis of human accelerated regulatory DNA
Rachel Gittelman is lead author on paper in Genome Research.

Dynamic proteome response of Pseudomonas aeruginosa to tobramycin antibiotic treatment
Xia Wu is lead author on paper in Molecular & Cellular Proteomics along with members of the Bruce, Manoil, and Singh labs.




Shotgun proteomics reveals physiological response to ocean acidification in Crassostrea gigas
Emma Timmins-Schiffman and Brook Nunn are authors on paper in BMC Genomics.





The Fitness Consequences of Aneuploidy Are Driven by Condition-Dependent Gene Effects
Anna Sunshine is lead author on paper in PLOS Biology.

Dr. Cole Trapnell has received a New Innovator Award from the NIH.

Reuters has named the University of Washington the world's most innovative public university.

The Big Data for Genomics and Neuroscience Training Grant has been funded by the National Cancer Institute.

Jarrett Egertson and Matthew Snyder have received the Parker Travel Award for best poster at the Genome Sciences department retreat.

Introducing the Genome Sciences incoming class of 2015:

Jolie Carlisle,  UC Berkeley
Khrystyna Dilai, Clarkson University
Sarah Hilton, George Washington University
Ken Jean-Baptiste, Princeton University
Juhye Lee, UW Medical Scientist Training Program / Rice University
Seungbeen Steven Lee, University of Washington
Andy Lin, University of Michigan
Eliah Overbey, UC San Diego
Jonathan Packer, Columbia University



Monica Sanchez has been awarded a Robert D. Watkins Graduate Research Fellowship from the American Society for Microbiology.

Dr. Mary-Claire King has been awarded the Prix Galien 2015 Pro Bono Humanum Award.

Altius Institute for Biomedical Sciences to be led by Dr. John Stamatoyannopoulos

Dr. Jesse Bloom has received a Burroughs Wellcome Young Investigator in the Pathogenesis of Infectious Diseases award.

Dr. Jay Shendure has been selected as a Howard Hughes Medical Institute Investigator.

Dr. Stan Fields has been named to the American Academy of Arts & Sciences.

Dr. Michael MacCoss has been awarded the Biemann Medal by the American Society for Mass Spectrometry.

Dr. Wenqing Fu has been awarded a K99 Career Transition Award from NHGRI.

Katherine Xue has been awarded a Hertz Fellowship.







Background research image courtesy of the Berg Lab and Jennie Dorman, Ph.D.