Dr. Frank Rosenzweig
Georgia Tech
Using Experimental and Comparative Genomics to Dissect a Major Evolutionary Transition
May 6, 2026 1:30 pm – 2:30 pm | Foege Auditorium
Georgia Tech
Using Experimental and Comparative Genomics to Dissect a Major Evolutionary Transition
May 6, 2026 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
April 29, 2026 1:30 pm – 2:30 pm | Foege Auditorium
Postdoctoral research talk
April 22, 2026 1:30 pm – 2:30 pm | Foege Auditorium
FHCC
Multi-modal profiling reveals epithelial hierarchy disorganization underlying field cancerization in head and neck cancer.
April 1, 2026 12:00 am – 1:00 am | Foege Auditorium
University of Washington
Accounting for the “spatial” in spatial omics: valid statistical inference for spatial transcriptomics
data
March 11, 2026 1:30 pm – 2:30 pm | Foege Auditorium
OHSU
From Fragments to Systems: How can we assemble biological mechanisms in the age of AI?
February 25, 2026 1:30 pm – 2:30 pm | Foege Auditorium
University of Massachusetts Medical School
Programmatic design and editing of cis-regulatory elements using deep learning
February 18, 2026 1:30 pm – 2:30 pm | Foege Auditorium
New York Genome Center
ReGenSeq: Repurposing Discarded Sequencers for Automated Spatial Biology
February 11, 2026 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
What can a dim fluorescent dye tell us about the nucleus?
February 4, 2026 1:30 pm – 2:30 pm | Foege Auditorium
Baker Lab, University of Washington
Lessons from developing deep learning networks for biomolecular structure prediction and design
January 28, 2026 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Dynamics of Cancer Immunotherapy
January 21, 2026 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Missing regulatory function in disease alleles: Early and late RNA eQTLs are driven by distinct genetic
mechanisms
January 14, 2026 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Complete genomes and complex forms of genetic variation
January 7, 2026 1:30 pm – 2:30 pm | Foege Auditorium
FHCC
Decoding the Regulatory Genome: Modelling Cellular and Population Perturbations for Disease Risk
December 3, 2025 1:30 pm – 2:30 pm | Foege Auditorium
FHCC
Complex dynamics underlie gene-environment interactions
November 12, 2025 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Systematic approaches to building credible and predictive models of cellular functions
November 5, 2025 1:30 pm – 2:30 pm | Foege Auditorium
FHCC
Viral fitness flux and latent space phylogenetics
October 29, 2025 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Biodiversity genomics in practice: an example of with lizards
October 22, 2025 1:30 pm – 2:30 pm | Foege Auditorium
FHCC
Determinants of human versus mosquito cell entry by the Chikungunya virus envelope proteins
October 8, 2025 1:30 pm – 2:30 pm | Foege Auditorium
FHCC
Predicting future experimental results with generative genomics
October 1, 2025 1:30 pm – 2:30 pm | Foege Auditorium
Rice University
Exploring embeddings for multi‑condition and cross‑species insights
May 7, 2025 1:30 pm – 2:30 pm | Foege Auditorium
FHCC
Decoding Cell Communication During Differentiation with Single-Cell Genomics
April 30, 2025 1:30 pm – 2:30 pm | Foege Auditorium
Allen Institute
Discrete Morse Graph Construction for High-Dimensional Transcriptomic Data
April 23, 2025 1:30 pm – 2:30 pm | Foege Auditorium
FHCC
Methods for tumor phenotype classification from cell-free DNA
March 12, 2025 1:30 pm – 2:30 pm | Foege Auditorium
Institute for Systems Biology
Progress towards metagenome-informed precision nutrition
February 26, 2025 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Transcriptome-wide association studies using single-cell eQTL reference
February 19, 2025 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
LCL: Contrastive Learning for Lineage Barcoded scRNA-seq Data
February 12, 2025 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Technologies for investigating chromatin structure in situ
February 5, 2025 1:30 pm – 2:30 pm | Foege Auditorium
FHCC
New algorithms for multimodal analysis of T cells
January 29, 2025 1:30 pm – 2:30 pm | Foege Auditorium
Center for Environmental Forensic Science, University of Washington
Fixing the bugs makes it worse:Â more challenges in ivory origin analysis
January 15, 2025 1:30 pm – 2:30 pm | Foege Auditorium
Simon Fraser University
Trustworthy machine learning for understanding genome regulation
December 4, 2024 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Machine-learning guided sequence design for mRNA and gene therapy applications
November 20, 2024 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
November 13, 2024 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Proteomic Signatures of Cognition
October 30, 2024 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Generative AI for Multimodal Biomedicine: applications in pathology and retinal imaging
October 23, 2024 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Multivariable Mendelian Randomization in High-Throughput Experiments
October 2, 2024 1:30 pm – 2:30 pm | Foege Auditorium
FHCC
Phylogenetic insights into Ebola dynamics in the unobserved reservoir
May 22, 2024 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Causal Discovery in Biological Systems
May 15, 2024 1:30 pm – 2:30 pm | Foege Auditorium
UC Berkeley
The evolution of neuronal diversity
May 8, 2024 1:30 pm – 2:30 pm | Foege Auditorium
FHCC
Predicting and designing T cell receptor interactions
April 3, 2024 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
The computational design of in situ hybridization probes
March 6, 2024 1:30 pm – 2:30 pm | Foege Auditorium
FHCC
Interpreting multimodal multi-condition single-cell data using continuous representations
February 28, 2024 1:30 pm – 2:30 pm | Foege Auditorium
EPFL
Bridging AI and Single-cell Genomics: Towards AI-driven Discoveries
February 21, 2024 1:30 pm – 2:30 pm | Foege Auditorium
UC Berkeley
Predicting functional constraints in proteins and non-coding DNA
February 14, 2024 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Towards next-generation medical foundation models: Milt-modality, multi-time-points, multi-scales
February 7, 2024 1:30 pm – 2:30 pm | Foege Auditorium
FHCC
Characterizing tumor heterogeneity and evolution in bladder cancer rapid autopsies
January 31, 2024 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Design of new protein functions using deep learning
January 24, 2024 1:30 pm – 2:30 pm | Foege Auditorium
FHCC
Avoiding double dipping in the analysis of single-cell RNA sequencing data
January 17, 2024 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Single-cell paired RNA & ATAC: Surveying broad multi-modal coordination in development and cancer
resistance
January 10, 2024 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Understanding the genetics of human traits through statistical integration of genetic and genomic data
December 6, 2023 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Opportunities and Challenges: Sequence-based deep learning models of gene regulation and variant effects
November 29, 2023 1:30 pm – 2:30 pm | Foege Auditorium
University of Sydney
A BLAST from the past: revisiting the BLAST E-value
November 8, 2023 1:30 pm – 2:30 pm | Foege Auditorium
WEHI
Data Analysis and Sharing for Multiplexed Assays of Variant Effect
September 27, 2023 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Center
Mechanistic insights about VDJ recombination from statistical inference on high-throughput T cell receptor data
April 26, 2023 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Protein design using deep learning
April 19, 2023 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Center
Cancer-specific alternative polyadenylation shapes tumor phenotypes in vivo
April 5, 2023 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Center
Density landscapes of single-cell phenotypic manifolds
March 29, 2023 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Characterizing measles brain entry and spread using spatially-resolved RNA-seq
March 8, 2023 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Heterogeneous agent-based models seek to uncover rules of life, inform experimental design, and enable control
of cell population dynamics
March 1, 2023 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Machine-learning guided protein structure prediction and cryoEM map interpretation
February 22, 2023 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Using sequence-to-activity neural network models to understand gene regulation
February 15, 2023 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Single-cell RNA-sequencing data analysis without double-dipping
December 7, 2022 1:30 pm – 2:30 pm | Foege Auditorium
Simon Fraser University
Deciphering the human epigenome through unsupervised machine learning
November 30, 2022 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Model misspecification in microbiome studies
November 9, 2022 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Bayesian MCMC to refine estimates of elephant origins from poached ivory
November 2, 2022 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Precision annotation: One term does not fit all
October 26, 2022 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Using compositional data analysis to study mutation spectrum evolution across the mammalian phylogeny
October 19, 2022 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Center
Interpreting the evolution of SARS-CoV-2
October 12, 2022 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Internal Energy, Fundamental Thermodynamic Relation, and Gibbs’ Ensemble Theory as Laws of Statistical Counting
October 5, 2022 1:30 pm – 2:30 pm | Foege Auditorium
University of British Columbia
A multi-kingdom genetic barcoding system for targeted clone isolation
September 28, 2022 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Research Center
Genetic circuits controlling the innate immune response to viral infections
May 25, 2022 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Deep learning of immune cell differentiation — within and across species
May 18, 2022 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Millisecond Informatics for Multiplex Quantitative Proteomics
March 2, 2022 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Protein design using deep learning
February 23, 2022 1:30 pm – 2:30 pm | Foege Auditorium
SEACells: Inference of transcriptional and epigenomic cellular states from single-cell genomics
data
February 2, 2022 1:30 pm – 2:30 pm | Foege Auditorium
Barriers to the Loss of Sex in Unicellular Eukaryotes
January 26, 2022 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Differential network analysis
January 19, 2022 1:30 pm – 2:30 pm | Foege Auditorium
Institute for Systems Biology
Engineering the human gut microbiome to improve human health
January 5, 2022 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Research Center
Predicting cancer subtype from circulating tumor DNA
December 8, 2021 1:30 pm – 2:30 pm | Foege Auditorium
Genetic determinants of adaptive immune receptor repertoire diversity
November 17, 2021 1:30 pm – 2:30 pm | Foege Auditorium
Stanford University
Computational Models for Spatial Omics
November 10, 2021 1:30 pm – 2:30 pm | Foege Auditorium
Foege Auditorium | flier
Explainable AI: where we are and how to move forward for cancer pharmacogenomics
November 3, 2021 1:30 pm – 2:30 pm | Foege Auditorium
Foege Auditorium
Deep learning analysis of tandem mass spectrometry data
October 27, 2021 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Continuous gene expression generation using neural ODE
October 20, 2021 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Research Center
Interpreting the evolution of SARS-CoV-2
October 13, 2021 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Stochastic modeling of colorectal cancer evolution
October 6, 2021 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
The Coming of Age of De Novo Protein Design
May 19, 2021 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Epidermal control of somatosensation in Drosophila
May 12, 2021 1:30 pm – 2:30 pm | Foege Auditorium
Computational modeling of lineage decision mechanisms using single-cell data
April 7, 2021 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Research Center
High-throughput functional interrogation of ultraconserved poison exons
March 10, 2021 1:30 pm – 2:30 pm | Foege Auditorium
beyond sample splitting: valid inference for clustering
January 27, 2021 1:30 pm – 2:30 pm | Foege Auditorium
Whole genome sequencing of the BXD recombinant inbred mouse lines pinpoints a locus explaining a significant
component of murine mutation spectrum differentiation
January 13, 2021 1:30 pm – 2:30 pm | Foege Auditorium
ML for extracting and explaining meaningful patterns in large genomics datasets
December 9, 2020 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Research Center
Overcoming paralog redundancy to identify new cancer drug targets
December 2, 2020 1:30 pm – 2:30 pm | Foege Auditorium
Institute for Systems Biology
Multiscale agent-based modeling with applications in personalized cancer therapy and cultivated meat
November 18, 2020 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Research Center
The evolutionary potential of the SARS-CoV-2 receptor binding domain
November 4, 2020 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Explainable AI to understand cancer and Alzheimer’s disease
October 28, 2020 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Research Center
Analysis of Transcriptional Regulation from Circulating Tumor DNA
October 21, 2020 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Embryo scale, single-cell spatial transcriptomics
October 14, 2020 1:30 pm – 2:30 pm | Foege Auditorium
Learning predictive models of alternative splicing, alternative polyadenylation and translation for variant predication and synthetic biology
October 7, 2020 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Segments of DNA, Relatedness of Individuals, and Heritability of Traits
February 19, 2020 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Agent-based models for HIV treatment and prevention” |
February 12, 2020 1:30 pm – 2:30 pm | Foege Auditorium
Clonal Deconvolution:Â Insights from Hand Analysis
January 29, 2020 1:30 pm – 2:30 pm | Foege Auditorium
Modeling across the spectrum: how data, dynamics, and rules inform proactive models of living systems
January 22, 2020 1:30 pm – 2:30 pm | Foege Auditorium
The Persistence of Unicellular Sex
December 4, 2019 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Research Center
Quantitative Models of mRNA Translation
November 20, 2019 1:30 pm – 2:30 pm | Foege Auditorium
Cell Types of the Cortex:Â Data, Taxonomy, and Resources
November 6, 2019 1:30 pm – 2:30 pm | Foege Auditorium
Evolution of cooperation through a quantitative lens: a personal journey
October 30, 2019 1:30 pm – 2:30 pm | Foege Auditorium
La Jolla Institute for Immunology
October 25, 2019 2:00 pm – 3:00 pm | Foege Auditorium
Tracking and forecasting epidemic spread through viral genome sequencing
October 23, 2019 1:30 pm – 2:30 pm | Foege Auditorium
University of Texas
Practical ggplot2
October 2, 2019 1:30 pm – 2:30 pm | Foege Auditorium
Invitae
Advancing genetic testing with active learning and functional modeling systems
September 25, 2019 1:30 pm – 2:30 pm | Foege Auditorium
Phosphoproteomics – Identification and Localization Strategies
September 17, 2019 1:30 pm – 2:30 pm | Foege Auditorium
Department of Computer Science, National Cheng Kung University
Hallmarks of slow translation initiation revealed in mitochondrially localizing mRNA sequences
July 31, 2019 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Traveling across spaces: the power of embedding genomic and proteomic data into a latent space” |
July 17, 2019 1:30 pm – 2:30 pm | Foege Auditorium
Machine learning methods for the interpretation of label-free proteomics data
July 10, 2019 1:30 pm – 2:30 pm | Foege Auditorium
Human centromeric regions: A view from the edge of our reference genome
March 13, 2019 1:30 pm – 2:30 pm | Foege Auditorium
Harvard Medical School
The Secrets of Sequences
March 6, 2019 1:30 pm – 2:30 pm | Foege Auditorium
Pacific Northwest Research Institute
The coevolution of transposable elements and their hosts: identifying LINE-1 elements in human genomes at allelic resolution
February 27, 2019 1:30 pm – 2:30 pm | Foege Auditorium
The more things change, the more they stay the same: a study of great ape mutation spectrum variation
February 20, 2019 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Omics Integration in Heterogeneous Data Settings
February 13, 2019 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Estimating diversity and relative abundance in microbial communities
February 6, 2019 1:30 pm – 2:30 pm | Foege Auditorium
University of British Columbia
Bioinformatics of cis-regulatory sequences: detection of causal mutations in genomes and design of gene therapy promoters
January 30, 2019 1:30 pm – 2:30 pm | Foege Auditorium
Leveraging novel assay technologies and high-dimensional analyses to better characterize immune
responses
January 23, 2019 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Research Center
Classical and “deep” probabilistic models for adaptive immune receptor sequences
January 16, 2019 1:30 pm – 2:30 pm | Foege Auditorium
Making Computational Models Reproducible
December 5, 2018 1:30 pm – 2:30 pm | Foege Auditorium
Building an Integrated Cell
October 31, 2018 1:30 pm – 2:30 pm | Foege Auditorium
Institute for Systems Biology
Personalized Eco-Evolutionary Dynamics in the Human Gut
October 24, 2018 1:30 pm – 2:30 pm | Foege Auditorium
WiGS sponsored seminar
October 17, 2018 2:00 pm – 3:00 pm | Foege Auditorium
Genomic Alterations in Cancer Revealed by Linked-Read Tumor DNA Sequencing and Blood Biopsies
October 10, 2018 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Research Center
Beyond random-walk Markov chain Monte Carlo for Bayesian phylogenetics” |
March 7, 2018 1:30 pm – 2:30 pm | Foege Auditorium
Towards a highly efficient diversity census of the microbial biosphere: a group testing approach
February 28, 2018 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
A systems biology perspective on aging
February 21, 2018 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Chromosome organization and chromatin dynamics during the transmission stages of
February 14, 2018 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Research Center
Analysis of T cell receptor repertoires reveals signatures of epitope specificity
January 17, 2018 1:30 pm – 2:30 pm | Foege Auditorium
Henikoff Lab, Fred Hutchinson Cancer Research Center
Caught in the act: Mapping chromatin dynamics during transcription
November 1, 2017 1:30 pm – 2:30 pm | Foege Auditorium
Center for Infectious Disease Research
Improving trypanosomatid genome assembly & annotation
October 25, 2017 1:30 pm – 2:30 pm | Foege Auditorium
Exploring Genetic Design Space with Phylosemantics
September 27, 2017 1:30 pm – 2:30 pm | Foege Auditorium
May 31, 2017 1:30 pm – 2:30 pm | Foege Auditorium
May 24, 2017 1:30 pm – 2:30 pm | Foege Auditorium
May 17, 2017 1:30 pm – 2:30 pm | Foege Auditorium
May 10, 2017 1:30 pm – 2:30 pm | Foege Auditorium
May 3, 2017 1:30 pm – 2:30 pm | Foege Auditorium
April 26, 2017 1:30 pm – 2:30 pm | Foege Auditorium
Akey Lab, University of Washington
Impacts of Neanderthal-Introgressed Sequences on the Landscape of Human Gene Expression
April 19, 2017 1:30 pm – 2:30 pm | Foege Auditorium
Borenstein and Queitsch Labs, University of Washington
Massive natural variation in Arabidopsis thaliana short tandem repeats in functional regions
March 29, 2017 1:30 pm – 2:30 pm | Foege Auditorium
Adaptive Biotechnologies
ImmunoSequencing in the age of immunotherapy: Â molecular views of the tumor micro-environment and the search for biomarkers
February 22, 2017 1:30 pm – 2:30 pm | Foege Auditorium
Stanford University
Rapid evolution of the human mutation spectrum
February 8, 2017 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Sequencing single-stranded DNA to explore its role in innate immunity
February 1, 2017 1:30 pm – 2:30 pm | Foege Auditorium
Baker Lab, University of Washington
Protein structure determination using metagenome sequence data
January 18, 2017 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
The landscape of cellular biochemical dynamics – a mathematical theory
October 5, 2016 1:30 pm – 2:30 pm | Foege Auditorium
Insights into evolution of primate centromeres from single molecule sequencing
December 2, 2015 1:30 pm – 2:30 pm | Foege Auditorium
Mapping the regulation of transcription
July 1, 2015 1:30 pm – 2:30 pm | Foege Auditorium
Adaptive Biotechnologies
Inferring CMV serostatus via T cell receptor sequencing
February 25, 2015 1:30 pm – 2:30 pm | Foege Auditorium
Ruzzo Lab, University of Washington
Whole Genome Comparisons Reveal a Clonal Global Expansion of a Marine Eukaryotic Microbe
February 18, 2015 1:30 pm – 2:30 pm | Foege Auditorium
Microsoft Research
February 13, 2015 1:30 pm – 2:30 pm | Foege Auditorium
Microsoft Research
HIV adaptation as a window into complex host-pathogen interactions
January 14, 2015 1:30 pm – 2:30 pm | Foege Auditorium
Ruzzo Lab, University of Washington
A Hierarchical Model for RNA-Seq Experiments
January 7, 2015 1:30 pm – 2:30 pm | Foege Auditorium
King Lab
Spatial and temporal mapping of de novo mutations in schizophrenia
November 19, 2014 1:30 pm – 2:30 pm | Foege Auditorium
Rinn Lab
November 12, 2014 1:30 pm – 2:30 pm | Foege Auditorium
Seelig Lab
Combining Synthetic Biology with Lessons from Big Data
October 29, 2014 1:30 pm – 2:30 pm | Foege Auditorium
Modeling tuberculosis, from cells to populations
October 1, 2014 1:30 pm – 2:30 pm | Foege Auditorium
Henikoff Lab, Fred Hutchinson Cancer Research Center
Asymmetric Nucleosomes Poise Yeast Promoters for Activation
February 19, 2014 1:30 pm – 2:30 pm | Foege Auditorium
IBM Computational Biology Center
Seeking the Wisdom of the Crowds Through Challenge-Based Competitions in Biomedical Research
January 24, 2014 2:00 pm – 3:00 pm | Foege Auditorium
Harvard University
Mapping Regulatory Networks with Single-Cell Transcriptomics in Cell Differentiation and Disease
January 22, 2014 1:30 pm – 2:30 pm | Foege Auditorium
MIT
Understanding the Genome for the Control of Animal Physiology and Behavior
January 15, 2014 1:30 pm – 2:30 pm | Foege Auditorium
Katze Lab, University of Washington
Turmoil in transcriptome: Using NGS and the CC Founders to unravel the host response to infection
December 4, 2013 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
The dynamic three-dimensional model of the P. falciparum genome reveals the role of genome architecture in regulating gene expression
October 23, 2013 1:30 pm – 2:30 pm | Foege Auditorium
Curie Institute of Paris
On finding breakpoints in DNA copy number profiles
October 16, 2013 1:30 pm – 2:30 pm | Foege Auditorium
Seattle Biomed and Institute for Systems Biology
Mathematical modeling of dynamical biological systems
October 2, 2013 1:30 pm – 2:30 pm | Foege Auditorium
July 16, 2013 1:00 pm – 2:00 pm | Foege Auditorium
Predicting relapse prior to transplantation in chronic myeloid leukemia by integrating expert knowledge and expression data
March 6, 2013 1:30 pm – 2:30 pm | Foege Auditorium
Mary-Claire King
February 27, 2013 1:30 pm – 2:30 pm | Foege Auditorium
Heterogeneity and dynamics of regulatory elements in the human genome
January 9, 2013 1:30 pm – 2:30 pm | Foege Auditorium
Network analysis of Leukemia expression, whole-genome, and clinical data
December 5, 2012 1:30 pm – 2:30 pm | Foege Auditorium
Dr. Anne Stone
TB and leprosy: origins and exchanges among humans and other primates
November 14, 2012 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Fast superposition and comparison of protein structures using OpenCL and GPUs
October 10, 2012 1:30 pm – 2:30 pm | Foege Auditorium
Cornell University
September 6, 2012 1:30 pm – 2:30 pm | Foege Auditorium
Effective Data Visualization
December 7, 2011 1:30 pm – 2:30 pm | Foege Auditorium
University of Wisconsin
Enabling transcript quantification in non-model organisms with RNA-Seq and generative probabilistic models
October 5, 2011 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
DNA strand displacement as a mechanism for programming chemistry
January 12, 2011 1:30 pm – 2:30 pm | Foege Auditorium
Princeton University
From Data to Networks to Understanding Complexity of Human Disease
October 6, 2010 1:30 pm – 2:30 pm | Foege Auditorium
Predicting the targets of mRNA-binding proteins
June 24, 2010 3:30 pm – 4:30 pm | Foege Auditorium
Dr. Jenny Graves
May 19, 2010 1:30 pm – 2:30 pm | Foege Auditorium
Departamento de Genética
Origin and evolution of Y chromosomes: Drosophila tales
April 14, 2010 1:30 pm – 2:30 pm | Foege Auditorium
HHMI Janelia Farm Research Campus
March 10, 2010 3:30 pm – 4:30 pm | Foege Auditorium
Cornell University
February 24, 2010 3:30 pm – 4:30 pm | Foege Auditorium
February 17, 2010 1:30 pm – 2:30 pm | Foege Auditorium
Director, NHGRI
January 27, 2010 1:30 pm – 2:30 pm | Foege Auditorium
Global Analysis of RNA Processing in Health and Disease
January 20, 2010 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Research Center
January 13, 2010 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Gene Duplication and Divergence in Mammals
November 18, 2009 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Heresy in Computational Biology
October 28, 2009 1:30 pm – 2:30 pm | Foege Auditorium
Stanford University
Adaptation in Drosophila
October 21, 2009 1:30 pm – 2:30 pm | Foege Auditorium
October 14, 2009 1:30 pm – 2:30 pm | Foege Auditorium
Localized haplotype clustering with the BEAGLE model.
July 2, 2009 1:30 pm – 2:30 pm | Foege Auditorium
Learning mechanistic models of gene expression regulation from natural sequence variation
April 8, 2009 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Research Center
Toward Structure-based Prediction of Protein-DNA Interactions
March 4, 2009 1:30 pm – 2:30 pm | Foege Auditorium
Senior Research Fellow, Institute for Molecular Bioscience
Tissue-specific prediction of transcription factor binding sites using chromatin modification data
February 25, 2009 1:30 pm – 2:30 pm | Foege Auditorium
UW Genome Sciences
Unnatural Selection in Dogs: A Genome-Wide Scan for Substrates of Human Tinkering
February 18, 2009 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Research Center
Comparative Chip-seq
February 11, 2009 1:30 pm – 2:30 pm | Foege Auditorium
UW Depts of Oral Biology & Microbiology, graduate student
Modeling protein structure, function, and interactions to characterize mechanisms of mammalian mineralization
February 4, 2009 1:30 pm – 2:30 pm | Foege Auditorium
Institute of Genetics, University of Nottingham, UK
Developing a mathematical model for chromosome replication
November 19, 2008 1:30 pm – 2:30 pm | Foege Auditorium
UW Genome Sciences
Molecular evolution of mammalian transcription factors
October 22, 2008 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Research Center
October 1, 2008 1:30 pm – 2:30 pm | Foege Auditorium
March 5 – Dr. Adam Siepel
Chemistry and Mass Spectrometry: New Tools for Protein Interaction Network Identification
March 10, 2008 1:30 pm – 2:30 pm | Foege Auditorium
Multi-lineage programming of human regulatory DNA
February 20, 2008 1:30 pm – 2:30 pm | Foege Auditorium
University of Oxford
Recombination and rapid evolution of genes and chromosomes
October 1, 2007 1:30 pm – 2:30 pm | Foege Auditorium
Alternative splicing and human genomic complexity
July 25, 2007 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Gene expression variation within and among human populations
March 7, 2007 1:30 pm – 2:30 pm | Foege Auditorium
The Rockefeller University
Large-scale mining of expression patterns in public microarray datasets
February 28, 2007 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
A thermodynamic approach to PCR primer design
February 14, 2007 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Dynamical modeling of HIV-1 drug resistance
February 7, 2007 1:30 pm – 2:30 pm | Foege Auditorium
University of Washington
Which Portions of Whole-Genome Multiple Alignments Are Reliable?
January 31, 2007 1:30 pm – 2:30 pm | Foege Auditorium
Harvard University
Machine Learning Analyses of Tandem Mass Spectra
January 24, 2007 1:30 pm – 2:30 pm | Foege Auditorium
University of Chicago
Genetic Variation and Natural Selection in the Human Genome
January 10, 2007 1:30 pm – 2:30 pm | Foege Auditorium
Rosetta Inpharmatics
TILLING and Ecotilling from Arabidopsis to Humans
December 6, 2006 1:30 pm – 2:30 pm | Foege Auditorium
Fred Hutchinson Cancer Research Center
Isochores and symmetry breaking in the human genome
November 8, 2006 1:30 pm – 2:30 pm | Foege Auditorium
Institute for Systems Biology
Genetic Mapping at 3-kb Resolution
November 1, 2006 1:30 pm – 2:30 pm | Foege Auditorium
Genome-wide analysis of DNA methylation and demethylation in
October 18, 2006 1:30 pm – 2:30 pm | Foege Auditorium
Modelling proteomes
March 9, 2005 1:30 pm – 2:30 pm | Foege Auditorium
Segmental Duplications and Human Genome Evolution
March 2, 2005 1:30 pm – 2:30 pm | Foege Auditorium
Predicting the in vivo signature of human gene regulatory sequences
February 23, 2005 1:30 pm – 2:30 pm | Foege Auditorium
Multiple Locus Linkage Analysis of High-throughput Phenotypes Applied to Genome-wide Expression in Yeast
February 16, 2005 1:30 pm – 2:30 pm | Foege Auditorium
Statistical Methods for Genome Comparison
February 9, 2005 1:30 pm – 2:30 pm | Foege Auditorium
Computational Analysis of Shotgun Proteomics Data
February 2, 2005 1:30 pm – 2:30 pm | Foege Auditorium
Comparative mammalian genomics: models of evolution and detection of functional elements
January 26, 2005 1:30 pm – 2:30 pm | Foege Auditorium
Virology Meets Computational Biology: Is This Enough To Stop The Next Pandemic?
January 19, 2005 1:30 pm – 2:30 pm | Foege Auditorium
The Origins of Gene and Genome Complexity
January 12, 2005 1:30 pm – 2:30 pm | Foege Auditorium
Deciphering rules governing enhancer functional evolution
January 5, 2005 3:30 pm – 4:30 pm | Foege Auditorium
Evidence for chromatin-interacting function of a GAGA motif in C. elegans
December 8, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Genome-wide analysis of human transcriptional regulatory elements
December 1, 2004 3:30 pm – 4:30 pm | Foege Auditorium
Gene Clusters in C. elegans
November 17, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Profiling DNA Methylation in the Arabidopsis Genome
November 10, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Prediction and design of macromolecular structures and interactions
November 3, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Accurate annotation of non-coding RNA in practical time
October 27, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Empirical Analysis of Sites of RNA Transcription for 30% of the Human Genome: The Changing Landscape of the Human Genome Annotations
October 20, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Signal and Noise in Genome Sequences
October 13, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Tools for Prediction of Regulatory Elements in Microbial Genes
October 6, 2004 1:30 pm – 2:30 pm | Foege Auditorium
September 29, 2004 3:30 pm – 4:30 pm | Foege Auditorium
Phylogeny, pathways and protein complexes
September 1, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Adaptive Evolution of Reproductive Proteins
June 2, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Dr. Jenny Graves
May 19, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Calculating Biological Behaviors in Phage Lambda Life Cycle
May 12, 2004 1:30 pm – 2:30 pm | Foege Auditorium
May 5, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Molecular Investigations of Genetic Conflict
April 28, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Associate Professor, Radiation Oncology and Medical Education and Biomedical Informatics (joint)
Anatomy, Biomedicine and Computing: the ABC’s of Informatics in Cancer Treatment
April 21, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Mathematical Models of RNA Silencing: How an Intracellular Immune System Avoids Autoimmune Reactions
April 14, 2004 1:30 pm – 2:30 pm | Foege Auditorium
An Assessment of Algorithms for the Discovery of Transcription Factor Binding Sites
April 7, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Coalescent Likelihood Estimators in Theory and Practice
March 4, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Computational Studies of Genetic Variation: Searching For Signatures of Selection in Humans and Mapping Gene Expression QTL in Yeast
March 3, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Genome-wide Analysis of Human Variation and Population Structure
February 25, 2004 1:30 pm – 2:30 pm | Foege Auditorium
The Distribution and Evolution of Duplications in the Genomes of Arabidopsis thaliana and Human
February 18, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Computational Analysis of Noncoding RNA Genes
February 11, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Rich Probabilistic Models for Genomic Data
February 4, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Some Perspectives on the Genetic Structure of Human Populations
January 28, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Inferring Relationships Among Individuals and Populations
January 21, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Incorporating Dependence Into Models for Biomolecular Motifs
January 14, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Multi Species Comparative Sequencing: Using Evolution to Decode the Human Genome
January 7, 2004 1:30 pm – 2:30 pm | Foege Auditorium
Linkage Disequilibrium in the Human Genome, and Implications for Complex Trait Mapping
December 10, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Improved Gene Selection For Classification Using Microarrays
December 3, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Modeling Molecular Motors: Monte-Carlo Meets Mechanics
November 19, 2003 1:30 pm – 2:30 pm | Foege Auditorium
November 12, 2003 1:30 pm – 2:30 pm | Foege Auditorium
The Gene Family Browser and other Recent Research at genome.ucsc.edu
November 5, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Rapidly Evolving Domains in the C. elegans Genome
October 29, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Complex Transcriptional Logics From Simple Molecular Interactions
October 22, 2003 1:30 pm – 2:30 pm | Foege Auditorium
A Statistical Framework for Genomic Data Fusion
October 15, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Finding Transcriptional Modules From Large Scale Gene Expression Data
October 8, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Finishing the Gene-ome: Computationally Directed Gene Structure Verification in C. elegans
October 1, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Constructing the Protein Space: From Sequence to Functional Inference
August 20, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Microsystems and Applications for Life-on-a-Chip
June 4, 2003 3:30 pm – 4:30 pm | Foege Auditorium
Building a maximally informative SNP map using linkage disequilibrium
May 28, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Dynamic Duplications in the Human Genome
May 21, 2003 1:30 pm – 2:30 pm | Foege Auditorium
May 14, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Genome and Transcriptome Evolution in Reptilia, Including Birds
May 7, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Discovering Causal Relationships from Biomedical Data
April 30, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Traditional Mutagenesis in the Post-Genomic Era
April 23, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Discovery of Regulatory Sequences Directing Transcription of Co-expressed Genes
April 16, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Genome Structure in Plants and Animals
April 9, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Computational Analysis of Splicing in Mouse and Trypanosomes
April 2, 2003 3:30 pm – 4:30 pm | Foege Auditorium
Jointly sponsored with Genome Sciences
Recent Duplication, Disease and the Evolution of the Human Genome
March 12, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Jointly sponsored with Genome Sciences
Expoiting Vertebrate Sequence for Insights into Human Biology
March 5, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Intein function and manipulation for protein purification.
February 26, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Haplotypes, Hotspots, and a Multilocus Model for Linkage Disequilibrium
February 19, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Prediction and Design of Protein Structures and Protein-Protein Interactions
February 12, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Genetic Analysis of Complex Traits: From Case-Control to Large Pedigree Designs
January 29, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Jointly sponsored with Genome Sciences. 3:30, Hitchcock 132
Exploratory Detection of Differential Gene Expression in DNA Microarray Experiments
January 22, 2003 3:30 pm – 4:30 pm | Foege Auditorium
Evolutionary Algorithms for Multiobjective Optimization: Application to the SNP Selection Problem
January 15, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Using Wright’s Quantitative Genetic Threshold Model to Analyze Discrete Traits
January 8, 2003 1:30 pm – 2:30 pm | Foege Auditorium
Jointly sponsored with Genome Sciences. 3:30, Hitchcock 132
Comparative Genomics and Molecular Population Genetics of the Drosophila Y Chromosome
December 11, 2002 3:30 pm – 4:30 pm | Foege Auditorium
Jointly sponsored with Genome Sciences. 3:30, Hitchcock 132
How to Build a Model Organism System Database
December 4, 2002 3:30 pm – 4:30 pm | Foege Auditorium
Functional Inferences From Rapidly Evolving Reproductive Proteins
November 20, 2002 1:30 pm – 2:30 pm | Foege Auditorium
Interdisciplinary Collaborations on Discovering Regulatory Elements.
November 13, 2002 1:30 pm – 2:30 pm | Foege Auditorium