Mirela Andronescu

Noble Lab

Prior Training:
Ph.D. in Computer Science, University of British Columbia, 2008

Contact Info:
andrones at uw dot edu
Foege S-220

Research Summary:
computational analysis of genome-wide and high-throughput data sets

Selected publications:

A three-dimensional model of the yeast genome.
Duan Z, Andronescu M, Schutz K, McIlwain S, Kim YJ, Lee C, Shendure J, Fields S, Blau CA, Noble WS. Nature. 2010 May 20;465(7296):363-7.

Improved free energy parameters for RNA pseudoknotted secondary structure prediction. Andronescu MS, Pop C, Condon AE. RNA. 2010 Jan;16(1):26-42.

Efficient parameter estimation for RNA secondary structure prediction. Andronescu M, Condon A, Hoos HH, Mathews DH, Murphy KP. Bioinformatics. 2007 Jul 1;23(13):i19-28.

Thermodynamically based DNA strand design.
Tulpan D, Andronescu M, Chang SB, Shortreed MR, Condon A, Hoos HH, Smith LM. Nucleic Acids Res. 2005 Sep 6;33(15):4951-64.

Secondary structure prediction of interacting RNA molecules. Andronescu M, Zhang ZC, Condon A. J Mol Biol. 2005 Feb 4;345(5):987-1001.

A new algorithm for RNA secondary structure design.
Andronescu M, Fejes AP, Hutter F, Hoos HH, Condon A.
J Mol Biol. 2004 Feb 20;336(3):607-24.